What pacha does? | Two flavors of every accessor | Configuring a source | Results depend on the configured dataset | Local ColDP archives | Resolving a name | Pulling one piece of information at a time | Asking a yes-or-no question | Citing the dataset, not the species | Clearing the cache | Cross-checking two sources | Plugging in a custom source | From lookups to documents: the Markdown accessors | Putting it all together with pacha_report() | Amaranthaceae
Package: pacha 0.1.1
Marcelo F. Amores-Palma
pacha: Reproducible Reporting for ChecklistBank Ethnobotanical Data
Provides programmatic access to the 'Listado de plantas de uso y aprovechamiento sostenible en Ecuador' <doi:10.48580/dgvrn>. Acts as a client for the 'ChecklistBank' API and for processing 'ColDP' (Catalogue of Life Data Package) files. Supports data retrieval for ethnobotanical records and includes built-in Markdown report generation for reproducible workflows.
Authors:
pacha_0.1.1.tar.gz
pacha_0.1.1.zip(r-4.7-any)pacha_0.1.1.zip(r-4.6-any)pacha_0.1.1.zip(r-4.5-any)
pacha_0.1.1.tgz(r-4.6-any)pacha_0.1.1.tgz(r-4.5-any)
pacha_0.1.1.tar.gz(r-4.7-any)pacha_0.1.1.tar.gz(r-4.6-any)
pacha_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
pacha/json (API)
| # Install 'pacha' in R: |
| install.packages('pacha', repos = c('https://envinatu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/envinatu/pacha/issues
Last updated from:0d543201c1. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 135 | ||
| source / vignettes | OK | 205 | ||
| linux-release | OK | 149 | ||
| macos-release | OK | 75 | ||
| macos-oldrel | OK | 86 | ||
| windows-devel | OK | 72 | ||
| windows-release | OK | 73 | ||
| windows-oldrel | OK | 95 | ||
| wasm-release | OK | 132 |
Exports:common_names_pachacommon_names_pacha_mdcompare_pachaestablishment_pachaestablishment_pacha_mdindexation_urls_pachaindexation_urls_pacha_mdis_listed_pachapacha_clear_cachepacha_configurepacha_reportpacha_sc_full_namepacha_sc_full_name_mdreference_pachasustainable_uses_pachasustainable_uses_pacha_mdthreat_status_pachathreat_status_pacha_md
Dependencies:askpassclicurlgluehttr2lifecyclemagrittropensslR6rlangsysvctrswithryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plain-text and Markdown accessors | accessors-pacha |
| Retrieve common names | common_names_pacha common_names_pacha_md |
| Compare the web API and local ColDP source | compare_pacha |
| Retrieve establishment status | establishment_pacha establishment_pacha_md |
| Retrieve indexation URLs | indexation_urls_pacha indexation_urls_pacha_md |
| Report whether a species is listed in the configured dataset | is_listed_pacha |
| Clear cached source records | pacha_clear_cache |
| Configure the pacha data module | pacha_configure |
| Generate a per-species Markdown report | pacha_report |
| Full scientific name of a species | pacha_sc_full_name pacha_sc_full_name_md |
| Retrieve the source database citation | reference_pacha |
| Retrieve sustainable-use records | sustainable_uses_pacha sustainable_uses_pacha_md |
| Retrieve conservation threat status | threat_status_pacha threat_status_pacha_md |